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references

 

We have successfully finished a whole genome annotation project for a world-wide known food industry company.

Some Genome Annotation Projects using AUGUSTUS

species remarks published
Aedes aegypti yellow fewer mosquito causing dengue fever Science, 2007
Brugia malayi parasitic worm causing elephantiasis Science, 2007
Galdieria sulphuraria red algae Planta, 2007
Tribolium castaneum red flour beetle, pest and model organism Nature, 2008
Arabidopsis thaliana plant model organism PNAS, 2008
Schistosoma mansoni parasitic worm causing bilharziosis Nature, 2009
Acyrthosiphon pisum pea aphid insect, agricultural pest PLOS Biology, 2010
Coprinus cinereus fungus PNAS, 2010
Nasonia vitripennis wasp insect Science, 2010
Amphimedon queenslandica sponge Nature, 2010
Culex pipiens common mosquito insect Science, 2010
Ricinus communis castor oil plant Nature Biotechnology, 2010
Chlamydomonas reinhardtii green algae Proteomics, 2011
Heliconius melpomene butterfly insect Nature, 2012
Verticillium longisporum fungus infecting oilseed rape  
Tetrahymena thermophilia protozoa model organism in biomedical research  
Nicotiana tabaccum tobacco plant  
Toxoplasma gondii protozoa causing toxoplasmosis  
Zea mays maize plant  
Apis mellifera honey bee insect  
Parasteatoda tepidariorum common house spider BMC Genomics, 2017

Scientific Puplications

 

Kerry Gendreau, Robert Haney, Evelyn Schwager, Torsten Wierschin, Mario Stanke, Stephen Richards, Jessica Ellen Garb (2017) "House spider genome uncovers evolutionary shifts in the diversity and expression of black widow venom proteins associated with extreme toxicity". BMC Genomics. accepted for publication

Tonatiuh Pena Centeno, Ramon Vidal, Magali Hennion & Stefan Bonn (2016). “Something to remember: A systems biological view of the epigenetic basis of memory”. Systembiologie. Issue 10-2016/6, pp. 72-75. ISSN 2191-2505

Tonatiuh Pena Centeno, Orr Shomroni, Magali Hennion, Rashi Halder, Ramon Vidal, Raza-Ur Rahman & Stefan Bonn (2016). “Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice”. Scientific Data 3, Article number: 160090. doi:10.1038/sdata.2016.90

Alice Nemajerova, Daniela Kramer, Saul S Siller, Christian Herr, Orr Shomroni, Tonatiuh Pena, Cristina Gallinas Suazo, Katharina Glaser, Merit Wildung Wildung, Henrik Steffen, Anusha Sriraman, Fabian Oberle, Magdalena Wienken, Magali Hennion, Ramon Vidal, Bettina Royen, Mihai Alevra, Detlev Schild, Robert Bals, Jürgen Dönitz, Dietmar Riedel, Stefan Bonn, Ken-Ichi Takemaru, Ute Moll & Muriel Lizé (2016). “TAp73 is a central transcriptional regulator of airway multiciliogenesis”. Genes and Development, June 2, 2016. doi: 10.1101/gad.279836.116

Hannelore Ehrenreich, Marina Mitjans, Sandra Van der Auwera, Tonatiuh Pena Centeno, Martin Begemann, Hans Grabe, Stefan Bonn & Klaus-Armin Nave (2017). “OTTO: A new strategy to extract mental disease-relevant combinations of GWAS hits from individuals". Molecular Psychiatry. accepted for publication

Project member in 2016